CelloType

CelloType is an end-to-end Transformer-based method for automated cell/nucleus segmentation and cell type classification

Basics:

• Installation
• Quickstart

Examples:

• Inference Cell Segmentation
• Sliced inference for Cell Segmentation (Large Images)
• Inference Cell Segmentation and Classification

Model Training:

• Cell Segmentation (Fluorescent Images)
• Cell Segmentation (Xenium Spatial Transcriptomics)
• Cell Annotation (Fluorescent Images)