Installation
------------------------------

First, install dependencies

* Linux with Python = 3.8.*
* Detectron2: follow `Detectron2 <https://detectron2.readthedocs.io/en/latest/tutorials/install.html>`_ installation instructions.

.. code-block:: bash

    # create conda environment
    conda create --name cellotype python=3.8
    conda activate cellotype
    # install pytorch and detectron2
    conda install pytorch==1.9.0 torchvision==0.10.0 cudatoolkit=11.1 -c pytorch -c nvidia
    python -m pip install 'git+https://github.com/facebookresearch/detectron2.git'
    # (add --user if you don't have permission)

    # Compile Deformable-DETR CUDA operators
    git clone https://github.com/fundamentalvision/Deformable-DETR.git
    cd Deformable-DETR
    cd ./models/ops
    sh ./make.sh

    # install cellotype
    pip install cellotype